Systems Biology Knowledgebase
Stored: Systems Biology Knowledgebase
| Type | Program |
|---|---|
| Sponsor Organization | Office of Biological and Environmental Research |
| Top Organization | Department of Energy |
| Creation Legislation | N/A |
| Website | Website |
| Purpose | Offers an open-source platform for systems biology, helping researchers analyze and share data to model microbes and plants for biological discoveries. |
| Program Start | 2012 |
| Initial Funding | |
| Duration | Indefinite |
| Historic | No |
Systems Biology Knowledgebase (KBase) is an open-source software and data platform that enables researchers to collaboratively analyze, model, and share biological data, focusing on microbes, plants, and their ecosystems. KBase aims to accelerate the pace of scientific discovery in systems biology, providing tools for data integration, analysis, and predictive modeling to design biological functions.[1]
Goals
- Enable data sharing and integration for systems biology research.[2]
- Provide computational tools for predictive modeling of biological functions.
- Foster collaboration among scientists to accelerate biological discovery.
Organization
KBase is managed by the Office of Biological and Environmental Research (BER) within the U.S. Department of Energy's Office of Science. It's a collaborative effort led by Lawrence Berkeley National Laboratory, with additional involvement from Argonne National Laboratory, Oak Ridge National Laboratory, and other institutions. Funding comes from DOE's budget for biological research.
The leadership role is held by the **KBase Director**.
Partners
- No specific partnerships are listed, but KBase involves collaboration with:
- Lawrence Berkeley National Laboratory
- Argonne National Laboratory
- Oak Ridge National Laboratory
History
KBase was initiated in 2012 under the DOE's Genomic Science Program to address the need for integrated biological data management and analysis. It has grown from a platform for microbial genomics to one that encompasses plants and environmental systems biology. Key historical events include the launch of its first public release in 2014, the addition of new analytical capabilities, and the expansion of its user community, which now includes thousands of researchers globally.
Funding
While specific initial funding amounts are not detailed, KBase is supported by DOE's allocations for biological and environmental research. Funding supports platform development, maintenance, and user support activities.
Implementation
Implementation involves:
- Development and maintenance of the KBase platform with new tools and data types.
- Providing user training and support to maximize platform use.
- Engaging with the scientific community for feedback and new feature development.
KBase is designed to be an ongoing resource, adapting to new scientific questions and technological advancements.
Related
External links
Social media
- No specific social media accounts for KBase; follow the Department of Energy for updates.
References
- ↑ "KBase: The Department of Energy Systems Biology Knowledgebase". https://www.kbase.us. Retrieved January 30, 2025.
- ↑ "KBase: The Department of Energy Systems Biology Knowledgebase". https://www.kbase.us. Retrieved January 30, 2025.